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Home Antivirus for Mac stops halfway thru scan - just says error

Hi.  I love sophos home antivirus, but it doesn't complete on my mac.  I have a large filesystem with a million objects.  It's been running slow too so I'm sure there is a trojan or two somewhere hiding.  When I try to run a  scan and I've run 3 of them so far, sophos stalls at about 500,000 objects left and does not report an error code that I can see.  Is there a way around this, or is there a way to run scans on the usual suspect directories to get my mac cleaned?

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