I noticed that SAR was finding a lot of hidden files. Looking closer, I noticed that many of them were *my* files, which I was pretty sure should still be there. Sure enough, when I opened up one of the folders in Explorer, there were the files.
At first I thought it might have been because I had run SAR at around the time when Microsoft Security Essentials runs, so I tried again this morning and it still found those files.
Next, I disabled the "Monitor file and program activity on your computer" checkbox in the MSE configuration before starting SAR. This seems to be working fairly well; now most of what I'm seeing is in "%UserProfile%\Local Settings\Temporary Internet Files\Content.IE5", which isn't very surprising, though the dialog box warning of possible security threats when I try to open the subfolders in Explorer is a bit alarming, as is the fact that it seems to have crashed in this folder... thankfully, it was just a shell extension that took (well, raised, actually) exception to failure to open some file or other...
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